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DEBUG: In ./functions/functions.php, in function sanitate. In function sanitate_rnajunction. RNAJunction Database - Junction Profile:9814

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Searching for motif id 9814

Entry # 9814: 2ADT_j2_A-U5_A-C35

Primary Citation: (from PDB entry 2ADT)

J.H.DAVIS M.TONELLI L.G.SCOTT L.JAEGER J.R.WILLIAMSON S.E.BUTCHER . RNA HELICAL PACKING IN SOLUTION: NMR STRUCTURE OF A 30 KDA GAAA TETRALOOP-RECEPTOR COMPLEX J.MOL.BIOL. V. 351 371 2005

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information

DEBUG: In JunctionPage.php: row2 = row[2] = 2

DEBUG: In JunctionPage.php: cluster = row[14] = 1GID.rnaview.pdb_j2_A-C223_A-U247.pdb

DEBUG: In JunctionPage.php: Variable PHP_INT_MAX used by PHP function explode = 2048

Type:Bulge LoopCluster:1GID j2 A-C223 A-U247 
NC-IUBMB Classification:HS2HS3Cluster Page
Angles: 139°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.11744Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UCCUAAGUC 9nt

Strand 2: Chain A: GAUAUGGA 8nt

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