here

here in JunctionPage beginning

DEBUG: In ./functions/functions.php, in function sanitate. In function sanitate_rnajunction. RNAJunction Database - Junction Profile:9623

NIH logo
Searching for motif id 9623

Entry # 9623: 1Z58_j5_2-G47_2-G115_2-C128_2-U142_2-G152

Primary Citation: (from PDB entry 1Z58)

M.AMIT R.BERISIO D.BARAM J.HARMS A.BASHAN A.YONATH . A CREVICE ADJOINING THE RIBOSOME TUNNEL: HINTS FOR COTRANSLATIONAL FOLDING. FEBS LETT. V. 579 3207 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information

DEBUG: In JunctionPage.php: row2 = row[2] = 5

DEBUG: In JunctionPage.php: cluster = row[14] = 1Z58.rnaview.pdb_j5_2-G47_2-G115_2-C128_2-U142_2-G152.pdb

DEBUG: In JunctionPage.php: Variable PHP_INT_MAX used by PHP function explode = 2048

Type:5-wayCluster:1Z58 j5 2-G47 2-G115 2-C128 2-U142 2-G152 
NC-IUBMB Classification:Cluster Page
Angles: 31:65:74:89:98:108:130:153:154:173°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.02607Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 2: CGAAUGG 7nt

Strand 2: Chain 2: CGAUGAAG 8nt

Strand 3: Chain 2: CCAC 4nt

Strand 4: Chain 2: GUAUCC 6nt

Strand 5: Chain 2: GGAUG 5nt

Valid XHTML 1.0 Transitional