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Searching for motif id 9442

Entry # 9442: 1YL3_j9_A-G45_A-A118_A-C130_A-C148_A-G173_A-G215_A-C231_A-A262_A-C426

Primary Citation: (from PDB entry 1YL3)

L.JENNER P.ROMBY B.REES C.SCHULZE-BRIESE M.SPRINGER C.EHRESMANN B.EHRESMANN D.MORAS G.YUSUPOVA M.YUSUPOV . TRANSLATIONAL OPERATOR OF MRNA ON THE RIBOSOME: HOW REPRESSOR PROTEINS EXCLUDE RIBOSOME BINDING. SCIENCE V. 308 120 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:9-wayCluster:1YL3 j9 A-G45 A-A118 A-C130 A-C148 A-G173 A-G215 A-C231 A-A262 A-C426 
NC-IUBMB Classification:Cluster Page
Angles: 17:22:25:33:34:34:42:44:57:62:65:74:76:77:77:78:84:89:90:91:91:98:99:103:105:109:118:120:122:136:142°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.59293Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GAAUGG 6nt

Strand 2: Chain A: AGCCGAUGA 9nt

Strand 3: Chain A: CCGG 4nt

Strand 4: Chain A: UCACCGCG 8nt

Strand 5: Chain A: CGCGGGGGGAAC 12nt

Strand 6: Chain A: GGAGAGGAAAGA 12nt

Strand 7: Chain A: UCGACUC 7nt

Strand 8: Chain A: GACCAGC 7nt

Strand 9: Chain A: GCUAAGUACU 10nt

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