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DEBUG: In ./functions/functions.php, in function sanitate. In function sanitate_rnajunction. RNAJunction Database - Junction Profile:5930

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Searching for motif id 5930

Entry # 5930: 1VOR_j2_A-G25_A-G58

Primary Citation: (from PDB entry 1VOR)

A.VILA-SANJURJO B.S.SCHUWIRTH C.W.HAU J.H.CATE . STRUCTURAL BASIS FOR THE CONTROL OF TRANSLATION INITIATION DURING STRESS. NAT.STRUCT.MOL.BIOL. V. 11 1054 2004

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information

DEBUG: In JunctionPage.php: row2 = row[2] = 2

DEBUG: In JunctionPage.php: cluster = row[14] = 1VP0.rnaview.pdb_j2_A-G25_A-G58.pdb

DEBUG: In JunctionPage.php: Variable PHP_INT_MAX used by PHP function explode = 2048

Type:Bulge LoopCluster:1VP0 j2 A-G25 A-G58 
NC-IUBMB Classification:HS3HS4Cluster Page
Angles: 120°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.52825Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GUGGAACCAC 10nt

Strand 2: Chain A: GUGAAACAC 9nt

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