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Searching for motif id 502

Entry # 502: 1FOQ_j5_C-G39_C-C48_C-G62_D-U80_D-U84

Primary Citation: (from PDB entry 1FOQ)

A.A.SIMPSON Y.TAO P.G.LEIMAN M.O.BADASSO Y.HE P.J.JARDINE N.H.OLSON M.C.MORAIS S.GRIMES D.L.ANDERSON T.S.BAKER M.G.ROSSMANN . STRUCTURE OF THE BACTERIOPHAGE PHI29 DNA PACKAGING MOTOR NATURE V. 408 745 2000

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1FOQ j5 C-G39 C-C48 C-G62 D-U80 D-U84 
NC-IUBMB Classification:Cluster Page
Angles: 42:55:83:90:91:118:124:133:137:179°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain C: GGGAUUAAAC 10nt

Strand 2: Chain C: AGCC 4nt

Strand 3: Chain C: CCCU 4nt

Strand 4: Chain D: GUUGU 5nt

Strand 5: Chain D: AUUGG 5nt

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