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DEBUG: In ./functions/functions.php, in function sanitate. In function sanitate_rnajunction. RNAJunction Database - Junction Profile:11186

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Searching for motif id 11186

Entry # 11186: 2HGJ_j5_A-C47_A-A118_A-C130_A-C148_A-G176

Primary Citation: (from PDB entry 2HGJ)

L.JENNER G.YUSUPOVA B.REES D.MORAS M.YUSUPOV . STRUCTURAL BASIS FOR MESSENGER RNA MOVEMENT ON THE RIBOSOME. NATURE V. 444 391 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information

DEBUG: In JunctionPage.php: row2 = row[2] = 5

DEBUG: In JunctionPage.php: cluster = row[14] = 2HGJ.rnaview.pdb_j5_A-C47_A-A118_A-C130_A-C148_A-G176.pdb

DEBUG: In JunctionPage.php: Variable PHP_INT_MAX used by PHP function explode = 2048

Type:5-wayCluster:2HGJ j5 A-C47 A-A118 A-C130 A-C148 A-G176 
NC-IUBMB Classification:Cluster Page
Angles: 8:87:87:91:92:94:99:156:160:168°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.2009Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GAAUGG 6nt

Strand 2: Chain A: CCGAUGA 7nt

Strand 3: Chain A: CCGG 4nt

Strand 4: Chain A: UCACC 5nt

Strand 5: Chain A: GGGGG 5nt

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