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DEBUG: In ./functions/functions.php, in function sanitate. In function sanitate_rnajunction. RNAJunction Database - Junction Profile:10826

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Searching for motif id 10826

Entry # 10826: 2GYA_j5_0-C1833_0-C1902_0-C1924_0-G1929_0-C1961

Primary Citation: (from PDB entry 2GYA)

K.MITRA J.FRANK . ELONGATION ARREST BY SECM VIA A CASCADE OF RIBOSOMAL RNA REARRANGEMENTS MOL.CELL V. 22 533 2006

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information

DEBUG: In JunctionPage.php: row2 = row[2] = 5

DEBUG: In JunctionPage.php: cluster = row[14] = 2GYA.rnaview.pdb_j5_0-C1833_0-C1902_0-C1924_0-G1929_0-C1961.pdb

DEBUG: In JunctionPage.php: Variable PHP_INT_MAX used by PHP function explode = 2048

Type:5-wayCluster:2GYA j5 0-C1833 0-C1902 0-C1924 0-G1929 0-C1961 
NC-IUBMB Classification:Cluster Page
Angles: 9:24:28:45:133:139:151:159:172:178°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.50757Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: ACGGCGG 7nt

Strand 2: Chain 0: CCUGCCCGG 9nt

Strand 3: Chain 0: UCCU 4nt

Strand 4: Chain 0: AGGUAGCGAAAUUCCUUGU 19nt

Strand 5: Chain 0: ACCUGCACGAAUGG 14nt

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